{ "_id": "6a5c90979baadeef8ab519e2", "Package": "QGglmm", "Type": "Package", "Title": "Estimate Quantitative Genetics Parameters from Generalised\nLinear Mixed Models", "Version": "0.8.0", "Date": "2025-01-20", "Authors@R": "person(given = \"Pierre\",\nfamily = \"de Villemereuil\",\nrole = c(\"aut\", \"cre\"),\nemail = \"pierre.de-villemereuil@mnhn.fr\")", "BugReports": "https://github.com/devillemereuil/qgglmm/issues", "Description": "Compute various quantitative genetics parameters from a\nGeneralised Linear Mixed Model (GLMM) estimates. Especially, it\nyields the observed phenotypic mean, phenotypic variance and\nadditive genetic variance.", "License": "GPL-2", "Config/pak/sysreqs": "make", "Repository": "https://devillemereuil.r-universe.dev", "Date/Publication": "2025-01-20 16:33:31 UTC", "RemoteUrl": "https://github.com/devillemereuil/qgglmm", "RemoteRef": "HEAD", "RemoteSha": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-19 08:50:57 UTC", "User": "root" }, "Author": "Pierre de Villemereuil [aut, cre]", "Maintainer": "Pierre de Villemereuil ", "_user": "devillemereuil", "_type": "src", "_file": "QGglmm_0.8.0.tar.gz", "_fileid": "https://r2.ropensci.org/6452147b10211a22711d162cbc5fdad46b297405174c8ae99cfe4da5591a1aee", "_filesize": 1193198, "_sha256": "6452147b10211a22711d162cbc5fdad46b297405174c8ae99cfe4da5591a1aee", "_expires": "2026-10-27T08:53:41.000Z", "_created": "2026-07-19T08:50:57.000Z", "_published": "2026-07-19T08:53:43.045Z", "_jobs": [ { "job": 88175777991, "time": 119, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "8440425209" }, { "job": 88175777988, "time": 122, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "8440425809" }, { "job": 88175777985, "time": 71, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "8440416761" }, { "job": 88175777999, "time": 93, "config": "macos-release-arm64", "r": "4.6.1", "check": "OK", "artifact": "8440420496" }, { "job": 88175494182, "time": 201, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "8440404510" }, { "job": 88175777997, "time": 110, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "8440423594" }, { "job": 88175778030, "time": 58, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "8440414434" }, { "job": 88175778034, "time": 71, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "8440416651" }, { "job": 88175778012, "time": 83, "config": "windows-release", "r": "4.6.1", "check": "OK", "artifact": "8440418784" } ], "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980", "_status": "success", "_upstream": "https://github.com/devillemereuil/qgglmm", "_commit": { "id": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "author": "Pierre de Villemereuil ", "committer": "Pierre de Villemereuil ", "message": "Use new \"Authors@R\" field in DESCRIPTION for CRAN incoming\n", "time": 1737390811 }, "_maintainer": { "name": "Pierre de Villemereuil", "email": "pierre.de-villemereuil@mnhn.fr", "login": "devillemereuil", "description": "", "uuid": 8666238 }, "_distro": "resolute", "_registered": true, "_dependencies": [ { "package": "cubature", "version": ">= 1.4", "role": "Imports" } ], "_owner": "devillemereuil", "_selfowned": true, "_usedby": 0, "_updates": [], "_tags": [], "_stars": 16, "_contributors": [ { "user": "devillemereuil", "count": 27, "uuid": 8666238 }, { "user": "ellisztamas", "count": 1, "uuid": 19650342 } ], "_userbio": { "uuid": 8666238, "type": "user", "name": "devillemereuil", "followers": 30 }, "_downloads": { "count": 266, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/QGglmm" }, "_mentions": 10, "_devurl": "https://github.com/devillemereuil/qgglmm", "_searchresults": 47, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/QGglmm.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/devillemereuil/qgglmm", "_realowner": "devillemereuil", "_cranurl": true, "_releases": [ { "version": "0.4", "date": "2016-07-13" }, { "version": "0.5", "date": "2016-09-28" }, { "version": "0.5.1", "date": "2016-10-03" }, { "version": "0.6.0", "date": "2017-10-09" }, { "version": "0.7.1", "date": "2018-06-15" }, { "version": "0.7.2", "date": "2018-11-12" }, { "version": "0.7.3", "date": "2019-12-06" }, { "version": "0.7.4", "date": "2020-01-07" }, { "version": "0.8.0", "date": "2025-01-20" } ], "_exports": [ "QGicc", "QGlink.funcs", "QGmean", "QGmvicc", "QGmvmean", "QGmvparams", "QGmvpred", "QGmvpsi", "QGparams", "QGpred", "QGpsi", "QGvar.dist", "QGvar.exp", "QGvcov" ], "_help": [ { "page": "QGglmm-package", "title": "Estimate Quantitative Genetics Parameters from Generalised Linear Mixed Models", "topics": [ "QGglmm-package", "QGglmm" ] }, { "page": "QGicc", "title": "Intra - Class Correlation coefficients (ICC) on the observed data scale", "topics": [ "QGicc" ] }, { "page": "QGlink.funcs", "title": "List of functions according to a distribution and a link function", "topics": [ "QGlink.funcs" ] }, { "page": "QGmean", "title": "Compute the phenotypic mean on the observed scale", "topics": [ "QGmean" ] }, { "page": "QGmvicc", "title": "Intra - Class Correlation coefficients (ICC) on the observed data scale (multivariate analysis).", "topics": [ "QGmvicc" ] }, { "page": "QGmvmean", "title": "Compute the multivariate phenotypic mean on the observed scale", "topics": [ "QGmvmean" ] }, { "page": "QGmvparams", "title": "Quantitative Genetics parameters from GLMM estimates (multivariate analysis).", "topics": [ "QGmvparams" ] }, { "page": "QGmvpred", "title": "Predict the evolutionary response to selection on the observed scale", "topics": [ "QGmvpred" ] }, { "page": "QGmvpsi", "title": "Compute a multivariate \"Psi\" (used to compute the additive genetic variance on the observed scale).", "topics": [ "QGmvpsi" ] }, { "page": "QGparams", "title": "Quantitative Genetics parameters from GLMM estimates.", "topics": [ "QGparams" ] }, { "page": "QGpred", "title": "Predict the evolutionary response to selection on the observed scale", "topics": [ "QGpred" ] }, { "page": "QGpsi", "title": "Compute \"Psi\" (used to compute the additive genetic variance on the observed scale).", "topics": [ "QGpsi" ] }, { "page": "QGvar.dist", "title": "Compute the distribution variance", "topics": [ "QGvar.dist" ] }, { "page": "QGvar.exp", "title": "Compute the variance of expected values (i.e. the latent values after inverse-link transformation.)", "topics": [ "QGvar.exp" ] }, { "page": "QGvcov", "title": "Compute the phenotypic variance-covariance matrix on the observed / expected scale", "topics": [ "QGvcov" ] } ], "_readme": "https://github.com/devillemereuil/qgglmm/raw/HEAD/README.md", "_rundeps": [ "cubature", "Rcpp" ], "_vignettes": [ { "source": "QGglmmHowTo.Rnw", "filename": "QGglmmHowTo.pdf", "title": "How to use QGglmm", "engine": "utils::Sweave", "headings": [ "Summary and aim of the package", "Overview of the theory", "The framework behind QGglmm", "Using QGglmm", "Particular cases" ], "created": "2016-09-28 02:09:28", "modified": "2023-01-27 08:45:59", "commits": 9 } ], "_score": 6.575187844927662, "_indexed": true, "_nocasepkg": "qgglmm", "_universes": [ "devillemereuil" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.8.0", "date": "2026-07-19T08:52:58.000Z", "distro": "resolute", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/31856cecc55f389cb8b6afc8212ea628ff748a21099bc710eb08b22f033a0b84", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.6.1", "os": "linux", "version": "0.8.0", "date": "2026-07-19T08:53:01.000Z", "distro": "resolute", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/ad158885729f4d3ad2d0f2409f96c639968ed5e00edc7a2bfe645b28f7a79c11", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.5.3", "os": "mac", "version": "0.8.0", "date": "2026-07-19T08:52:17.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/12c9618748349be8d86867f41dd2873cb02ea3de3b7d1a8f8734c860d53c0e4b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.6.1", "os": "mac", "version": "0.8.0", "date": "2026-07-19T08:52:35.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/b726eb690a0f442cc966bf4067ed5aa988c8610b2bcb2052476209b860bc6dce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.6.0", "os": "wasm", "version": "0.8.0", "date": "2026-07-19T08:53:02.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/04062d28a90ad8e74b801062ff934c0d01e8f22843bb174d962ad8423fc38cec", "status": "success", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.7.0", "os": "win", "version": "0.8.0", "date": "2026-07-19T08:51:57.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/078f25afed7df346a50b3630d7e54e01ba98793069d6bf2f8eef95f516f4ac1e", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.5.3", "os": "win", "version": "0.8.0", "date": "2026-07-19T08:52:05.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/12a0ff0e686a8fb3a8b859fb4566a1df5e3abeb444db53078a3db6ecfa66c991", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" }, { "r": "4.6.1", "os": "win", "version": "0.8.0", "date": "2026-07-19T08:52:17.000Z", "commit": "4baf97450f7854c10d5402f20c3a0e6a36325efe", "fileid": "https://r2.ropensci.org/dee091e5fb15f52a2ec8b233df6f4f106a21de418b48a0c5eeddc856d8dd63a0", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/devillemereuil/actions/runs/29680426980" } ] }