Package: Reacnorm 0.2.1

Reacnorm: Perform a Partition of Variance of Reaction Norms

Partitions the phenotypic variance of a plastic trait, studied through its reaction norm. The variance partition distinguishes between the variance arising from the average shape of the reaction norms (V_Plas) and the (additive) genetic variance . The latter is itself separated into an environment-blind component (V_G/V_A) and the component arising from plasticity (V_GxE/V_AxE). The package also provides a way to further partition V_Plas into aspects (slope/curvature) of the shape of the average reaction norm (pi-decomposition) and partition V_Add (gamma-decomposition) and V_AxE (iota-decomposition) into the impact of genetic variation in the reaction norm parameters. Reference: de Villemereuil & Chevin (2025) <doi:10.32942/X2NC8B>.

Authors:Pierre de Villemereuil [aut, cre]

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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
Reacnorm/json (API)

# Install 'Reacnorm' in R:

install.packages('Reacnorm', repos = c('https://devillemereuil.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/devillemereuil/reacnorm/issues

Datasets:

dragon_continuous - A simulated dataset on the reaction norms of dragons in a continuous environment
dragon_discrete - A simulated dataset on the reaction norms of dragons at a discretised environmental gradient

On CRAN:

4.30 score 4 stars 9 scripts 204 downloads 10 exports 4 dependencies

Last updated from:733bbe4ce4. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel	OK	98
source / vignettes	OK	170
linux-release	OK	104
macos-release	OK	179
macos-oldrel	OK	138
windows-devel	OK	75
windows-release	OK	69
windows-oldrel	OK	70
wasm-release	OK	79

Exports:rn_cs_gen rn_gamma_env rn_gen_decomp rn_mean_by_env rn_phi_decomp rn_pi_decomp rn_vgen rn_vp_env rn_vplas rn_vtot

Dependencies:cubature matrixStats Rcpp stringi

TutoReacnorm

Summary and aim of the package | Overview of the theory | Studying reaction norms in a discretised environment | Studying reaction norms in a continuous environment

Rendered fromTutoReacnorm.pdf.asisusingR.rsp::asis

Last update: 2024-10-06
Started: 2024-10-02

Help page	Topics
A simulated dataset on the reaction norms of dragons in a continuous environment	dragon_continuous
A simulated dataset on the reaction norms of dragons at a discretised environmental gradient	dragon_discrete
Decompose the \mathbf{G}-matrix from a character-state model	rn_cs_gen
Compute the gamma-decomposition of additive genetic variance per environment	rn_gamma_env
Compute the decomposition of the additive genetic variance and their gamma- and iota-decomposition	rn_gen_decomp
Compute the phenotypic mean on the observed scale	rn_mean_by_env
Compute the \varphi-decomposition of V_{\text{Plas}}	rn_phi_decomp
Compute the pi-decomposition of V_{\text{Plas}}	rn_pi_decomp
Compute the total genetic variance V_{\text{Gen}}	rn_vgen
Compute the total phenotypic variance V_{\text{Tot}}	rn_vp_env
Compute the purely environmental plastic variance V_{\text{Plas}}	rn_vplas
Compute the total phenotypic variance V_{\text{Tot}}	rn_vtot

Package: Reacnorm 0.2.1

Reacnorm: Perform a Partition of Variance of Reaction Norms

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